miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|161571253|gb|EY942716.1|EY942716 TTTTTTTTTTTTTTTTTTTTGTGTTTTAAAACCGAACCGAATTCAAACCGAACTGAGTTCAAACCGAACCGAAACCGATC
CAAACCGAACTAACTATGGTTTACTTTGGTTGGATAAATCATTGAACCGAATTAACCAAACCGAACCGAACCGGAACCGA
ACCGATAAAATAACCGAAGTGCCCACCCCTAATAACAAGTGTCCGAAAACCGAACTCTCAAACCATGACGGGGGGTTCGT
CATCATCATCATCATCATCATCTGTCCCGTCGTCTTGTTCTTGCCATCCTGAGTGCGCCTTGAATTTACAGACAGGACAT
GTTCCTTGCTGTCTAAGCCATGGATCGATACAGACTGCATGAAACTGATGCAAGCAAGGTAGGGTGCGAACAACCTCCCC
AACAGTAACTTGTTCGAGGCAAACGCTACAAGTGAGCTCGTCTTCCGTTCCTTTTTTACTCGCACTGACAGAATCTTGCT
TCTTCTCCGCTGAGGATGAGGTTGATGCCTGCTTTGTCAAAGAGGAACCATTTTCAGGGTACAAGACCTTGTACTTGCGT
ACTGGAAGTGCATTTATCTCTTCCTCGCTCATAGAGTTTGTGGGGACATTATCAGAATCAAGTGCTCTTAGAGTTTCATA
ATCTAAGTCATCAAACTCCCGATCAAGAAGAGCCAGCTGGAGCCTAAGTCCTTGAAGACGCCCTCTGG




Most similar to sp|Q9M2S6|SDIR1_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1
           OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1
          Length = 273

 Score =  218 bits (555), Expect = 3e-56
 Identities = 106/130 (81%), Positives = 109/130 (83%)
 Frame = -3

Query: 664 DREFDDLDYETLRALDSDNVPTNSMSEEEINALPVRKYKVLYPENGXXXXXXXXXXXXAE 485
           DREFDDLDYETLRALDSDNV T SMSEEEINALPV KYKVL PENG            AE
Sbjct: 133 DREFDDLDYETLRALDSDNVSTTSMSEEEINALPVHKYKVLDPENGCSLAKQASTSSSAE 192

Query: 484 KKQDSVSASKKGTEDELTCSVCLEQVTVGEVVRTLPCLHQFHAVCIDPWLRQQGTCPVCK 305
           K  DS + SKKGTEDELTCSVCLEQVTVGE+VRTLPCLHQFHA CIDPWLRQQGTCPVCK
Sbjct: 193 KMLDSANESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWLRQQGTCPVCK 252

Query: 304 FKAHSGWQEQ 275
           F+AHSGWQEQ
Sbjct: 253 FRAHSGWQEQ 262